DNA

Part:BBa_K3841039:Design

Designed by: Emil Ørsted Christensen   Group: iGEM21_DTU-Denmark   (2021-10-17)


Homology arm for neutral insertion site 1 in Komagataella phaffii


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The length of the homology arm is 65 base pairs as results from Frøhling, Frederik Bayer (2019) “Implementation of CRISPR-Cas9 and CASCADE Platform in Pichia Pastoris, Implementering Af CRISPR-Cas9 Og CASCADE Platformen i Pichia Pastoris.†showed that 45 base pairs was sufficient to repair DSBs in K. phaffii GS115.


Source

The homology arm is complementary to chromosome 1 (position 1357445-1357509) within the assembled genome of K. phaffii GS115 strain by De Schutter et al. 2009 (Accession number FN392319).